James A. Shapiro
Author, 'Evolution: A View from the 21st Century'; Professor of Microbiology, University of Chicago
Inconvenient Truths: Why Are Self-Styled Defenders of Evolution so Resistant to Lessons From Molecular Genetics?
"I am unaware of even a single example of biological complexity which defies explanation within the modern Darwinian framework. Perhaps you could offer up such an example...?"
1. Multiple antibiotic resistance in bacteria;
2. Origin of the eukaryotic cell;
3. Origin of photosynthetic eukaryotic lineages;
4. The "abominable mystery" of rapid angiosperm evolution.
Your list indicates to me that you are suffering from some significant misconceptions and / or a lack of understanding of what the Theory of Evolution by Random Mutation and Natural Selection actually is.
Just addressing your first case, for example... well, antibiotic resistance is a textbook example of evolution in practice, and one that Darwin himself likely would have predicted (and certainly not been surprised by).